c# - What is a PDB file? - Stack Overflow
Oct 10, 2010 · Program Debug Database file (pdb) is a file format by Microsoft for storing debugging information. When you build a project using Visual Studio or command prompt the compiler creates …
viewer - Reading a .pdb file - Stack Overflow
Feb 11, 2012 · I have a lot of files in .pdb format, some of them downloaded, but until now I can't use or read what's inside, so I'm looking for how to read and view the .pdb file format from MS Windows XP. …
.net - What's a PDB file? - Stack Overflow
Jun 26, 2012 · A PDB file is created when you compile a C/C++ program with /ZI or /Zi or a Visual Basic/C#/JScript .NET program with /debug. Each time it creates an OBJ file, the C/C++ compiler …
python - parsing pdb file with format change - Stack Overflow
PDB files appear to be fixed column width files, not space delimited. So if you must parse them manually (rather than using an existing tool like pdb-tools), you'll need to chop the line up using something …
c# - Generate PDB from .NET DLL file? - Stack Overflow
May 18, 2010 · The only missing piece is format of the PDB file, which is a closely guarded secret. Reflector can take a dll and turn it into a solution, where you can use Visual Studio to compile it and …
executable - Embed .pdb debug symbol information into an .exe file in ...
Feb 12, 2012 · I am able to compile the source code with VS (2008), but the build normally keeps the debug information in a separated .pdb file, not in the .exe file (unfortunately I only want to read debug …
Bond Type of ligands in PDB files all appear as SINGLE
Note Generally speaking, pdb files are best avoided in computational chemistry and formats like mol2 are more reliable for storing your structures. This is particularly true for small molecules such as the …
How can I convert JSON data to Protein Data Bank (PDB) using Python ...
Jul 30, 2020 · 1 I would like to convert my JSON data to Protein Data Bank (PDB) format using Python script. I was able to convert them to CSV, however I couldn't convert them to PDB-format. Any help …
Parsing a .pdb file in Python - Stack Overflow
For large pdb files with a lot of atoms, there is no blank left between fields, so you cannot use the split command. Instead, you can use the Protein Data Bank format definition to parse the pdb file:
retrieve_pdb_file from Bio.PDB.PDBList creates .ent files, not .pdb
Jun 21, 2021 · Note that the retrieve_pdb_file method also has an optional argument pdir that specifies a specific directory in which to store the downloaded PDB files; NOTE. The default download format …